PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627188.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 313aa    MW: 35344.5 Da    PI: 9.7418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1677122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw + 
   XP_013627188.1  77 RGHWRPTEDAKLKELVAQFGPQNWNLIAHHLL-GRSGKSCRLRWCNQ 122
                      899****************************9.***********985 PP

2Myb_DNA-binding53.17.6e-17129173147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+ +l+ a++ +G++ W++I+r ++ gRt++ +k++w+ +
   XP_013627188.1 129 KKAFTEEEETRLLTAHRAYGNK-WSLISRFFP-GRTDNAVKNHWHVV 173
                      679*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2472123IPR017930Myb domain
SMARTSM007172.9E-1476125IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-2877170IPR009057Homeodomain-like
PfamPF002491.1E-1577122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2678130IPR009057Homeodomain-like
CDDcd001677.05E-1380121No hitNo description
PROSITE profilePS5129424.394124178IPR017930Myb domain
SMARTSM007176.9E-15128176IPR001005SANT/Myb domain
PfamPF002492.5E-14129172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-20131176IPR009057Homeodomain-like
CDDcd001674.25E-11131174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDPKLIEKVL TGNKTIKLSR RFEEANNFGS PPNSHTNLSL ARNHLHNKSY SVLERGENEN  60
SFKRRGNNGM NKKLCSRGHW RPTEDAKLKE LVAQFGPQNW NLIAHHLLGR SGKSCRLRWC  120
NQLDPRINKK AFTEEEETRL LTAHRAYGNK WSLISRFFPG RTDNAVKNHW HVVMARRTRA  180
SERQQALHAP SGNAEMTVSS VYRYNRGGFF GRVAEGTLVN EADDDDGSAV STCTTELSLT  240
PPSSTHQPRF LHDDNTLASG KDGQCVQIAE VNGICSNKMD HQNHYTTTVS EREVEMKTKS  300
GFYIFDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31771787108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627188.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A0D3B1P60.0A0A0D3B1P6_BRAOL; Uncharacterized protein
STRINGBra006422.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99771836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-146myb domain protein 56